Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs11246131 chr11:367139 A/C 9.22E-6 119 9.43 51.1 38.13 KM Plot
THYM rs11247979 chr4:1207517 T/C 6.82E-5 117 11.73 42.35 42.73 KM Plot
THYM rs112493374 chr21:44074855 C/A 9.47E-5 118 41.77 41.05 28.43 KM Plot
THYM rs112540771 chr19:29316100 C/T 7.96E-6 119 46.6 41.77 22.9 KM Plot
THYM rs112541918 chr9:97165545 A/C 7.78E-5 119 41.77 40.43 17.03 KM Plot
THYM rs112561851 chr6:117156171 A/AAT 5.14E-5 117 19.03 50.28 38.58 KM Plot
THYM rs112567494 chr9:97149362 T/G 7.78E-5 119 41.77 40.43 17.03 KM Plot
THYM rs11269361 chr3:26048145 G/GTGTGTGTGTGTGTGTA 4.57E-5 114 27.2 50.85 40.67 KM Plot
THYM rs112710540 chr20:29516082 C/T 8.34E-6 118 38.33 50.1 10.78 KM Plot
THYM rs112746064 chr6:72861078 C/T 0.000147 118 38.23 50.12 17.77 KM Plot
THYM rs1127477 chr6:3270510 G/C 0 118 4.13 44.3 38.13 KM Plot
THYM rs112790822 chr17:71246230 C/G 8.4E-9 118 42.73 40.3 12.63 KM Plot
THYM rs112818704 chr5:34845970 G/T 0.000147 117 41.22 39.28 28.43 KM Plot
THYM rs112832067 chr11:20028186 A/G 2.56E-6 119 42.25 32.7 13.75 KM Plot
THYM rs11284443 chr6:3260345 GT/G 0 117 4.13 42.73 38.83 KM Plot